Can GenomicAnnotations.jl deal with multi-exon genes?

[Xiao-Zhong]

Hi, I'm trying converting a genbank file to a gff with the package, however it fails. For example, one gene is as below:
Input: Screenshot 1; https://www.ncbi.nlm.nih.gov/nuccore/7525012

Code: Screenshot 2

Output: Screenshot 3

As shown, the CDS in the gff output doesn't have an intron between the two exons. CDS sequences extracted based on these kinds of coordinates must be wrong. Thank you!

[kdyrhage]

The intron information is stored in the Locus, so in theory yes. GFF.Writer ignores it, though. I only ever work with bacterial data so I don't know what the expected output is. Could you give an example of what you would like the result to look like?

[Xiao-Zhong]

Thanks! Please check the links below:
https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md
https://www.ncbi.nlm.nih.gov/genbank/genomes_gff/

Oh. I see. You only focused on bacterial data, single-exon genes.

[kdyrhage]

v0.3.8 fixes this.