Update _config.yml #3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Website | |
| on: | |
| push: | |
| branches: | |
| - gh-pages | |
| - main | |
| pull_request: [] | |
| jobs: | |
| build-website: | |
| if: ${{ !endsWith(github.repository, '/styles') }} | |
| runs-on: ubuntu-20.04 | |
| env: | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Set up Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: '3.0' | |
| bundler-cache: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Install GitHub Pages, Bundler, and kramdown gems | |
| run: | | |
| gem install github-pages bundler kramdown kramdown-parser-gfm | |
| - name: Install Python modules | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools wheel pyyaml==5.3.1 requests | |
| - name: Checkout the lesson | |
| uses: actions/checkout@master | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Look for R-markdown files | |
| id: check-rmd | |
| run: | | |
| echo "count=$(shopt -s nullglob; files=($(find . -iname '*.Rmd')); echo ${#files[@]})" >> $GITHUB_OUTPUT | |
| - name: Set up R | |
| if: steps.check-rmd.outputs.count != 0 | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| install-r: false | |
| - name: Restore R Cache | |
| if: steps.check-rmd.outputs.count != 0 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install needed packages | |
| if: steps.check-rmd.outputs.count != 0 | |
| run: | | |
| source('bin/dependencies.R') | |
| install_required_packages() | |
| shell: Rscript {0} | |
| - name: Query dependencies | |
| if: steps.check-rmd.outputs.count != 0 | |
| run: | | |
| source('bin/dependencies.R') | |
| deps <- identify_dependencies() | |
| create_description(deps) | |
| use_bioc_repos() | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Install system dependencies for R packages | |
| if: steps.check-rmd.outputs.count != 0 | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd || echo "Nothing to update" | |
| done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | |
| - name: Render the markdown and confirm that the site can be built | |
| run: make site | |
| - name: Checkout github pages | |
| if: ${{ github.event_name == 'push' && steps.check-rmd.outputs.count != 0 && github.ref != 'refs/heads/gh-pages'}} | |
| uses: actions/checkout@master | |
| with: | |
| ref: gh-pages | |
| path: gh-pages | |
| - name: Commit and Push | |
| if: ${{ github.event_name == 'push' && steps.check-rmd.outputs.count != 0 && github.ref != 'refs/heads/gh-pages'}} | |
| run: | | |
| # clean up gh-pages | |
| cd gh-pages | |
| git rm -rf . # remove all previous files | |
| git restore --staged . # remove things from the stage | |
| cd .. | |
| # copy everything into gh-pages site | |
| cp -r `ls -A | grep -v 'gh-pages' | grep -v '.git' | grep -v '.bundle/' | grep -v '_site'` gh-pages | |
| # move into gh-pages, add, commit, and push | |
| cd gh-pages | |
| # setup git | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add -A . | |
| git commit --allow-empty -m "[Github Actions] render website (via ${{ github.sha }})" | |
| git push origin gh-pages | |
| # return | |
| cd .. | |
| # waiting for https://github.com/carpentries/styles/issues/551 | |
| # to be addressed | |
| # - run: make lesson-check-all | |
| # if: always() |