CONTRIBUTING.md

Adding new wrappers

If you add new wrappers, please try to mirror the original tool's command line flags. However, there are a few exceptions:

1. Flags with underscores are not supported by Typer and are converted. For example, --output_dir is not supported even if the function takes output_dir as an argument.
2. The number of cores to be used must be specified with the --threads flag for consistency. Use the Threads object from vdsearch.types as the argument.

Be sure to include a citation for the original tool in the References section of the docstring. The reference should be in Elsevier Harvard style.