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Creating GM db - option to suppress print messages #57

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shraddhapai opened this issue May 13, 2019 · 1 comment
Open

Creating GM db - option to suppress print messages #57

shraddhapai opened this issue May 13, 2019 · 1 comment
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@shraddhapai
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@philmaweb Can we suppress messages to standard out when GM is creating input PSN?
Ideally there would be a simple progress bar. Also if there is a simple way to speed this step, parallelize if we aren't already doing so, that would speed netDx more. Esp when we have ~2K input features for feature selection & test classification, per train/test split.

@shraddhapai
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shraddhapai commented May 14, 2019

Print messages seem to be coming from ProfileToNetworkDriver.

May14@16:41:43  INFO ProfileToNetworkDriver:212->computing network
May14@16:41:43  INFO ProfileToNetworkDriver:506->Initializing correlation with profile
May14@16:41:43  INFO ProfileToNetworkDriver:332->total gene records: 231
May14@16:41:43  INFO ProfileToNetworkDriver:333->total features: 13
May14@16:41:43  INFO ProfileToNetworkDriver:212->computing network
May14@16:41:43  INFO ProfileToNetworkDriver:506->Initializing correlation with profile
May14@16:41:43  INFO ProfileToNetworkDriver:510->Correlation initialized. Total time: 26
May14@16:41:43  INFO ProfileToNetworkDriver:510->Correlation initialized. Total time: 17
May14@16:41:43 DEBUG ProfileToNetworkDriver:598->level control at size limit of 50
May14@16:41:43 DEBUG ProfileToNetworkDriver:598->level control at size limit of 50
May14@16:41:43  INFO ProfileToNetworkDriver:577->Total time for calculating: 133

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