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config file to automate net construction #21

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shraddhapai opened this issue Apr 25, 2017 · 0 comments
Open

config file to automate net construction #21

shraddhapai opened this issue Apr 25, 2017 · 0 comments

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@shraddhapai
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Would be great for a dataset to generate a config file indicating:

  • input/output dirs, output prefix name
  • net definitions: net name ("clinical"), path_to_unit_file (clinical.txt), type (profile|ranged data), similarity function (PearsonCorr|normDiff|custom), custom .R file, colour (for enrichment map)

would streamline creation of "network composition" automatically by predictor. would automate creation of different net types through switch-case statement. would automate generation of enrichment map etc., downstream.

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