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Allow user to specify majority #286

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arkal opened this issue May 16, 2018 · 0 comments
Open

Allow user to specify majority #286

arkal opened this issue May 16, 2018 · 0 comments
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@davidstew

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arkal commented May 16, 2018

related to #283

Add indel_majority and snv_majority to indexes in the input yaml. Default is None and the majority is figured out dynamically. If the value is provided and is non-None, assert we have enough callers to meet the majority (n_caller >= majority for each snv, indel) and use this value instead.
@arkal arkal assigned arkal and davidstew and unassigned arkal May 16, 2018
davidstew pushed a commit that referenced this issue May 18, 2018
Make majority a user provided option (Resolves #286)
f7266f6 
Resolves #286

Added snv_majority and indel_majority in a consensus tab under mutation_calling
in input_parameters.yaml. If values are not provided, the majority will be dynamically
figured out.
davidstew pushed a commit that referenced this issue May 19, 2018
Make majority a user provided option (Resolves #286)
85337d0 
Resolves #286

Added snv_majority and indel_majority in a consensus tab under mutation_calling
in input_parameters.yaml. If values are not provided, the majority will be dynamically
figured out.
davidstew pushed a commit that referenced this issue Jun 5, 2018
Make majority a user provided option (resolves #286)
b018a59 
resolves #286

Added snv_majority and indel_majority in a consensus tab under mutation_calling
in input_parameters.yaml. If values are not provided, the majority will be dynamically
figured out.
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