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unit_tests.yml
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name: Unit Tests & Code Coverage
on:
# Triggers the workflow on push or pull request events but only for the main branch
push:
branches:
- main
pull_request:
branches:
- main
workflow_dispatch: # allow manual triggering
defaults:
run:
shell: bash -l {0}
jobs:
lint:
name: Code style
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: Install Dependencies
run: |
python -m pip install --upgrade pip
pip install flake8
- name: Run flake8
run: flake8
- name: Run black
uses: rickstaa/action-black@v1
with:
black_args: ". --check"
test-matrix:
name: Python ${{ matrix.python-version }}
runs-on: ubuntu-latest
needs: lint
strategy:
matrix:
python-version:
# - "3.12" # not yet
- "3.11"
- "3.10"
- "3.9"
- "3.8"
max-parallel: 5
env:
DISPLAY: ':99.0'
steps:
- name: Checkout the repository
uses: actions/checkout@v3
- name: Set timezone
uses: szenius/[email protected]
with:
timezoneLinux: "America/Chicago"
- name: Install OS libraries for workflow build
run: |
sudo apt update -y
sudo apt install -y \
libxcb-icccm4 \
libxcb-image0 \
libxcb-keysyms1 \
libxcb-randr0 \
libxcb-render-util0 \
libxcb-xinerama0 \
libxcb-xfixes0 \
libxkbcommon-x11-0 \
x11-utils
# /sbin/start-stop-daemon \
# --start \
# --quiet \
# --pidfile /tmp/custom_xvfb_99.pid \
# --make-pidfile \
# --background \
# --exec /usr/bin/Xvfb -- \
# :99 \
# -screen 0 \
# 1920x1200x24 \
# -ac \
# +extension GLX
- name: Create Python ${{ matrix.python-version }} environment
uses: mamba-org/setup-micromamba@v1
with:
cache-environment: true
cache-environment-key: env-key-${{ matrix.python-version }}
condarc: |
channel-priority: flexible
environment-file: env.yml
environment-name: anaconda-test-env-py-${{ matrix.python-version }}
create-args: >-
coveralls
pytest
pytest-cov
pytest-qt
pytest-xvfb
python=${{ matrix.python-version }}
setuptools-scm
- name: Initial diagnostics
run: |
micromamba info
micromamba list
conda config --show-sources
conda config --show
micromamba env list
printenv | sort
- name: Install this package
shell: bash -l {0}
run: pip install --no-deps -e .
- name: Run tests with pytest & coverage
shell: bash -l {0}
run: |
# coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst .
# coverage combine
# coverage report --precision 3
pytest -vvv ./gemviz/tests/test_init.py ./gemviz/tests/test_utils.py
# - name: Upload coverage data to coveralls.io
# shell: bash -l {0}
# run: |
# micromamba list coveralls
# which coveralls
# coveralls debug
# coveralls --service=github
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
# COVERALLS_PARALLEL: true
# # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support
# coveralls:
# name: Report unit test coverage to coveralls
# needs: test-matrix
# runs-on: ubuntu-latest
# container: python:3-slim
# steps:
# - name: Gather coverage and report to Coveralls
# run: |
# echo "Finally!"
# pip3 install --upgrade coveralls
# # debug mode: output prepared json and reported files list to stdout
# # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html
# coveralls debug
# coveralls --service=github --finish
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}