-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
1 changed file
with
104 additions
and
90 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,107 +1,121 @@ | ||
| name: training_2022 | ||
|
|
||
| # | ||
| # Provide a run-time suite of software supporting various | ||
| # user activities during and after data collection | ||
|
|
||
| # use: | ||
| # date -Is; conda env create -y -f ./environment.yml date -Is | ||
|
|
||
| # Copied & adapted from current ./bluesky/environment*.yml file | ||
|
|
||
| channels: | ||
| # - apsu # Must be first for compatible epics-base, pyepics, pvapy | ||
| - conda-forge | ||
|
|
||
| # due to licensing Terms & Conditions, don't use the defaults channel. | ||
| - nodefaults | ||
| - aps-anl-tag | ||
| # - nsls2forge | ||
| # Note this advice: https://stackoverflow.com/questions/67695893/ | ||
|
|
||
| dependencies: | ||
|
|
||
| # --- Python core packages | ||
| - python | ||
| - ipython | ||
| - jupyter | ||
| - jupyterlab | ||
| - notebook | ||
| # Use conda to install only the basics and whatever pip can't install. | ||
| # This includes binaries such as Qt and hkl. | ||
| # Everything else by pip. | ||
|
|
||
| # ------------------------------------------------------- | ||
| - python =3.11 | ||
| - pip | ||
| - psutil | ||
|
|
||
| # --- testing and quality assurance | ||
| - black | ||
| - coverage | ||
| - coveralls | ||
| - flake8 | ||
| - pylint | ||
| - pytest | ||
|
|
||
| # --- Qt | ||
| - pyqt=5 | ||
| - qt=5 | ||
|
|
||
| # --- general support packages | ||
| - apischema | ||
| - aps-dm-api >=5 | ||
| - bitshuffle | ||
| - blosc | ||
| - epics-base >=7.0.5 | ||
| - h5netcdf | ||
| - h5py | ||
| - hdf5plugin | ||
| - imagecodecs-lite | ||
| - ipympl | ||
| - lxml | ||
| - mongoquery >=1.3.6 | ||
| - pandas | ||
| - pint | ||
| - pyEpics >=3.5.0 | ||
| - pymongo | ||
| - pysumreg | ||
| - readline !=8.1.2 | ||
| - scikit-image | ||
| - xlrd | ||
|
|
||
| # --- Bluesky framework packages | ||
| - apstools >=1.6.15 | ||
| - area-detector-handlers | ||
| - bluesky-queueserver | ||
| - bluesky-queueserver-api | ||
| - bluesky-widgets | ||
| - bluesky >=1.8.1 | ||
| - databroker-pack | ||
| - databroker =1.2 | ||
| - hklpy | ||
| - ophyd >=1.6.3 | ||
| - pydm | ||
|
|
||
| # --- user-requested packages | ||
| - nexpy | ||
| - punx | ||
| - pvview | ||
| - pymca | ||
| - pyRestTable | ||
| - spec2nexus | ||
| - xrayutilities | ||
|
|
||
| # # --- packaging and publishing | ||
| # - conda-build | ||
| # - sphinx | ||
| # - sphinxcontrib-napoleon | ||
| # - twine | ||
| # - versioneer | ||
|
|
||
| # for tiled install (separately, by pip, as above) | ||
| - anyio | ||
| - dask | ||
| - fastapi | ||
| - httpx | ||
| - jinja2 | ||
| - lz4 | ||
| - prometheus_client | ||
| - pydantic | ||
| - tifffile | ||
| - uvicorn | ||
| - apsu::pvapy | ||
| - apsu::aps-dm-api >=8 # linux-64 osx-64 | ||
| - hkl # linux-64 | ||
| - nbconvert-pandoc | ||
| - pandoc >3 | ||
| - pyqt =5 | ||
| - qt =5 | ||
|
|
||
| - pip: | ||
| - ophyd-registry | ||
| - tiled | ||
|
|
||
| # APS-only | ||
| # - apsbss # only works on APS subnet | ||
|
|
||
| # user-requested visualization packages | ||
| - c2dataviewer # EPICS PVA images | ||
| - gemviz # from tiled | ||
| - mdaviz # MDA data files | ||
| - nexpy # HDF5 and SPEC data files | ||
| - pymca # HDF5 and SPEC data files | ||
|
|
||
| # --- user-requested packages | ||
| - https://github.com/BCDA-APS/adl2pydm/archive/main.zip | ||
| # --- optional Bluesky framework packages for evaluation | ||
| # - bluesky-webclient is NOT Python software, don't install it this way | ||
| # https://github.com/bluesky/bluesky-webclient | ||
| - ophyd-registry | ||
| - punx | ||
| # - pvmail | ||
| - pvview | ||
| - pyRestTable | ||
| - spec2nexus | ||
| - xrayutilities | ||
|
|
||
| # --- Python core packages | ||
| - ipython | ||
| - jupyter | ||
| - jupyterlab | ||
| - notebook | ||
| - numpy <1.999 # avoid any and all numpy 2.0 releases (includes 2.0.0aNNN) | ||
| - psutil | ||
|
|
||
| # --- general support packages | ||
| - apischema | ||
| - bitshuffle | ||
| - h5py | ||
| - hdf5plugin | ||
| # - httpie | ||
| - imagecodecs-lite | ||
| - ipympl | ||
| - lxml | ||
| - pandas | ||
| - pint | ||
| - pymongo | ||
| # - pysumreg | ||
| - scikit-image | ||
| - xlrd | ||
|
|
||
| # --- Bluesky framework packages | ||
| - apstools | ||
| - area-detector-handlers | ||
| - bluesky >=1.12 | ||
| - bluesky-httpserver | ||
| - bluesky-kafka | ||
| - bluesky-live | ||
| - bluesky-queueserver | ||
| - bluesky-queueserver-api | ||
| - bluesky-widgets | ||
| - databroker <=1.999 | ||
| - databroker-pack | ||
| - happi | ||
| - hklpy >=1.1.1 | ||
| - httpx >=0.14 # issue #75 | ||
| - ophyd >=1.9 | ||
| - pydm | ||
| - tiled[all] | ||
| # https://github.com/pydata/xarray/issues/6818 | ||
| - xarray !=2022.6.0 # incompatible with numpy=1.20 | ||
|
|
||
| # --- testing and quality assurance | ||
| - black | ||
| - flake8 | ||
| - pylint | ||
| - pytest | ||
| - pytest-notebook | ||
| - ruff | ||
|
|
||
| # --- packaging and publishing | ||
| - coverage | ||
| - myst-parser | ||
| - nbsphinx | ||
| - pydata-sphinx-theme | ||
| - pygithub | ||
| - sphinx | ||
| - sphinx-design | ||
| - sphinx-tabs | ||
| - sphinxcontrib-napoleon | ||
| - twine |