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RadovanTomik
requested changes
Oct 31, 2023
conversion_to_fhir.py
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| import xml.etree.ElementTree as ElementTree | ||
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| class Patient: |
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Move the data model classes into separate files
conversion_to_fhir.py
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| create_specimen(patient.identifier, specimen, number) | ||
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| def create_patient(patient, number): |
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Use smart-on-fhir: https://github.com/smart-on-fhir/client-py for creating the FHIR Resources.
conversion_to_fhir.py
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| tree = ElementTree.ElementTree(root) | ||
| xml_file_path = "patient_" + number + ".fhir.xml" | ||
| tree.write(xml_file_path) |
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Use the FHIR validator for validating the resources: https://hl7.org/fhir/validator/
omop_conversion.py
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| from datetime import datetime, timedelta | ||
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| class Patient: |
omop_conversion.py
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| 'password': '', | ||
| } | ||
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| cdm_schema = [""" |
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where did you get the schema from?
added 22 commits
November 21, 2023 14:21
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Hi,
this is my first draw, maybe I will change it soon and add commits.