From 68f7bac105b574c4eff5d85526a24a2fae3963ee Mon Sep 17 00:00:00 2001
From: John Gerrard Holland <john_holland1@brown.edu>
Date: Fri, 1 Dec 2023 14:21:46 -0500
Subject: [PATCH] docs: restructure basic-usage directory

---
 docs/cli/basic-usage/example/__init__.py   | 0
 docs/cli/basic-usage/{ => example}/lib.py  | 0
 docs/cli/basic-usage/{ => example}/plot.py | 3 ++-
 docs/cli/basic-usage/index.md              | 8 ++++----
 4 files changed, 6 insertions(+), 5 deletions(-)
 create mode 100644 docs/cli/basic-usage/example/__init__.py
 rename docs/cli/basic-usage/{ => example}/lib.py (100%)
 rename docs/cli/basic-usage/{ => example}/plot.py (96%)

diff --git a/docs/cli/basic-usage/example/__init__.py b/docs/cli/basic-usage/example/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/docs/cli/basic-usage/lib.py b/docs/cli/basic-usage/example/lib.py
similarity index 100%
rename from docs/cli/basic-usage/lib.py
rename to docs/cli/basic-usage/example/lib.py
diff --git a/docs/cli/basic-usage/plot.py b/docs/cli/basic-usage/example/plot.py
similarity index 96%
rename from docs/cli/basic-usage/plot.py
rename to docs/cli/basic-usage/example/plot.py
index 42e25ca2..4ccb4f48 100644
--- a/docs/cli/basic-usage/plot.py
+++ b/docs/cli/basic-usage/example/plot.py
@@ -4,13 +4,14 @@
 import numpy as np
 import pandas as pd
 import typer
-from lib import ground_truth, noise_std
 from matplotlib import pyplot as plt
 from sklearn.model_selection import GridSearchCV
 
 from autora.state import StandardState
 from autora.workflow.__main__ import load_state
 
+from .lib import ground_truth, noise_std
+
 
 def plot_results(state: StandardState):
     x = np.linspace(-10, 10, 100).reshape((-1, 1))
diff --git a/docs/cli/basic-usage/index.md b/docs/cli/basic-usage/index.md
index 9ff33dc7..9320b85d 100644
--- a/docs/cli/basic-usage/index.md
+++ b/docs/cli/basic-usage/index.md
@@ -6,8 +6,8 @@ The command line interface allows us to load and save `States` and run arbitrary
 
 To use the command line, we first define a file containing the functions we want to run on the State.
 
-```python title="lib.py"
---8<-- "https://raw.githubusercontent.com/AutoResearch/autora-core/docs/update-workflow-docs/docs/cli/basic-usage/lib.py"
+```python title="example/lib.py"
+--8<-- "https://raw.githubusercontent.com/AutoResearch/autora-core/docs/update-workflow-docs/docs/cli/basic-usage/example/lib.py"
 ```
 
 We can run the pipeline of initialization, condition generation, experiment and theory building as follows.
@@ -109,8 +109,8 @@ print(state)
 `state` is the following object which, once loaded, can be treated like any other `State` object.
 For instance, we can plot the results:
 
-```python title="plot.py"
---8<-- "https://raw.githubusercontent.com/AutoResearch/autora-core/docs/update-workflow-docs/docs/cli/basic-usage/plot.py"
+```python title="example/plot.py"
+--8<-- "https://raw.githubusercontent.com/AutoResearch/autora-core/docs/update-workflow-docs/docs/cli/basic-usage/example/plot.py"
 ```
     
 ```shell