From 8c38b71fbf886899dcc9d16e59fa8ede2bcbeecd Mon Sep 17 00:00:00 2001 From: Tom Close Date: Wed, 7 Aug 2024 06:47:50 +1000 Subject: [PATCH] fixed up xnat config --- tutorial/start-up-script.sh | 3 ++- tutorial/xnat4tests-config.yaml | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/tutorial/start-up-script.sh b/tutorial/start-up-script.sh index 145fde1..437dfd5 100644 --- a/tutorial/start-up-script.sh +++ b/tutorial/start-up-script.sh @@ -1,6 +1,7 @@ #!/usr/bin/env bash ssh-keygen -t rsa -N "" -f $HOME/.ssh/id_rsa.pub +echo 'export PATH=$HOME/.local/bin:$PATH' >> ~/.bashrc # Clone the pipelines-community repository mkdir -p ~/git @@ -13,7 +14,7 @@ pushd ~/git/pipelines-community git pull # Install the pipelines-community repository -pip install -r ./tutorial/requirements.txt +pip install --upgrade -r ./tutorial/requirements.txt # Pre-build/pull the required XNAT docker images to save time xnat4tests -c ./tutorial/xnat4tests-config.yaml start --with-data openneuro-t1w diff --git a/tutorial/xnat4tests-config.yaml b/tutorial/xnat4tests-config.yaml index 2e7c6a2..778ae2a 100644 --- a/tutorial/xnat4tests-config.yaml +++ b/tutorial/xnat4tests-config.yaml @@ -1,4 +1,4 @@ build_args: xnat_cs_plugin_version: 3.4.3 xnat_version: 1.8.10.1 -xnat_root_dir: /Users/tclose/xnat4tests-root # /home/ubuntu/xnat4tests-root +xnat_root_dir: /home/ubuntu/xnat4tests-root