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No HLA name file #61

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arghdan opened this issue Apr 14, 2024 · 0 comments
Open

No HLA name file #61

arghdan opened this issue Apr 14, 2024 · 0 comments

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@arghdan
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arghdan commented Apr 14, 2024

When running "arcas genotype fastq1 fastq2" I consistently get the error that there is no such file or directory for hla_nom_p.txt. Specifically " No such file or directory: 'Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/../dat/IMGTHLA/wmda/hla_nom_p.txt' "

Similarly when I try to update the HLA file: using "arcasHLA reference --update ", I get the same error

Specifically, the full output is:

arcasHLA reference --update
Traceback (most recent call last):
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 568, in
build_convert(False)
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 482, in build_convert
p_group = process_hla_nom(hla_nom_p)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Desktop/anaconda3/share/arcas-hla-0.6.0-1/scripts/reference.py", line 236, in process_hla_nom
for line in open(hla_nom, 'r', encoding='UTF-8'):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

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