Merge pull request #492 from AndersenLab/hotfix/enable-PDB-qa

Hotfix/enable pdb qa
AndersenLab · Jun 12, 2024 · 6202a18 · 6202a18
2 parents 2f7100c + 0039ead
commit 6202a18
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Showing 4 changed files with 4 additions and 5 deletions.
diff --git a/env/qa/global.env b/env/qa/global.env
@@ -156,7 +156,7 @@ HERITABILITY_CONTAINER_VERSION=v0.04
 HERITABILITY_TASK_QUEUE_NAME=caendr-qa-h2calc
 HERITABILITY_EXAMPLE_FILE=data/heritability_example_{SPECIES}.tsv
 
-PHENOTYPE_DB_ENABLED=False
+PHENOTYPE_DB_ENABLED=True
 
 FASTA_FILENAME_TEMPLATE={RELEASE}_{SPECIES}_{GENOME}.dev.genome
 FASTA_EXTENSION_FILE=.fa

diff --git a/src/modules/site-v2/templates/_includes/phenotype-search-bar.html b/src/modules/site-v2/templates/_includes/phenotype-search-bar.html
@@ -64,8 +64,7 @@
   // Update checked tags via event
   document.addEventListener("{{table_id}}-update-tag", ({detail}) => {
     const filterTag = $("#{{ table_id }}-tags-filter input[type=checkbox]").filter(function() {
-      console.log( $(this).attr('value'), detail.tagVal );
-      return $(this).attr('value') === detail.tagVal;
+      return $(this).attr('value').toLowerCase() === detail.tagVal.toLowerCase();
     })
     filterTag.prop('checked', true);
     search();

diff --git a/src/pkg/caendr/caendr/api/phenotype.py b/src/pkg/caendr/caendr/api/phenotype.py
@@ -235,7 +235,7 @@ def get_trait_categories(query = None):
   tags = filter(None, ( tr.get_tags() for tr in query ))
 
   # Flatten the list of lists into a set, and sort the result
-  tags_list = { tg for tr_tag in tags for tg in tr_tag }
+  tags_list = { tg.title() for tr_tag in tags for tg in tr_tag }
   return sorted(tags_list)
 
 

diff --git a/src/pkg/caendr/caendr/models/sql/phenotype_metadata.py b/src/pkg/caendr/caendr/models/sql/phenotype_metadata.py
@@ -62,7 +62,7 @@ def get_tags(self):
       If no tag set defined, returns None.
     '''
     if self.tags:
-      return { tg.strip() for tg in self.tags.split(',') }
+      return { tg.strip().lower() for tg in self.tags.split(',') }
 
 
   def add(self, trait_obj):