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What are values in Sequential_Transformation_input_2 based on? #171

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LunavdL opened this issue Nov 30, 2023 · 0 comments
Open

What are values in Sequential_Transformation_input_2 based on? #171

LunavdL opened this issue Nov 30, 2023 · 0 comments

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@LunavdL
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LunavdL commented Nov 30, 2023

Hello,

This is not a bug, just a question that I haven't been able to figure out yet:
what are the values in "Sequential_Transformation_input_2.txt" (and the matching figure) based on?

The values in Sequential_Transformation_input_1, I can link to the FunctionHit tab in the METABOLIC_result.xlsx file (summing the # of genomes for which that specific function is present). But I can't find anything in METABOLIC_result.xlsx linking to oligosaccharide-degradation, cellobiose etc.

In addition, I have a dataset with only genomes (no raw reads), so I would like to run METABOLIC-G. METABOLIC-G does not output the number of genomes for sequential transformation input 1 and 2, but I assume I should be able to calculate this?

Thank you in advance,
Best regards,
Luna

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