diff --git a/src/aind_qc_portal/projects/__init__.py b/src/aind_qc_portal/projects/__init__.py deleted file mode 100644 index e69de29..0000000 diff --git a/src/aind_qc_portal/projects/behavior_processing.py b/src/aind_qc_portal/projects/behavior_processing.py deleted file mode 100644 index e69de29..0000000 diff --git a/src/aind_qc_portal/projects/mappings.py b/src/aind_qc_portal/projects/mappings.py deleted file mode 100644 index e0803be..0000000 --- a/src/aind_qc_portal/projects/mappings.py +++ /dev/null @@ -1,73 +0,0 @@ -"""Custom mappings from DocDB -> Dataframe columns for the platform portal""" - -from pydantic import BaseModel -from typing import Optional -from aind_qc_portal.projects.smartspim_processing import * -from aind_qc_portal.utils import format_link - - -class Mapping(BaseModel): - """Mapping information for a column""" - - docdb_location: str - processing: Optional[str] - backup_location: Optional[str] - backup_processing: Optional[str] - - -smartspim = { - "Subject ID": Mapping( - docdb_location="subject.subject_id", - ), - "Genotype": Mapping( - docdb_location="", - ), - "Institution": Mapping( - docdb_location="", - ), - "Acquisition Time": Mapping( - docdb_location="", - ), - "Processed Time": Mapping( - docdb_location="", - ), - "Orientation": Mapping( - docdb_location="", - ), - "Stitched Link": Mapping( - docdb_location="", - ), - "Segmentation Channels": Mapping( - docdb_location="", - ), - "CH1": Mapping( - docdb_location="", - processing=format_link, - ), - "CH2": Mapping( - docdb_location="", - ), - "CH3": Mapping( - docdb_location="", - ), - "Registration Channel": Mapping( - docdb_location="", - ), - "rCH1": Mapping( - docdb_location="", - ), - "rCH2": Mapping( - docdb_location="", - ), - "rCH3": Mapping( - docdb_location="", - ), - "Data Asset Name": Mapping( - docdb_location="name", - ), -} - -# asset ID, mouse ID, genotype, session type, acquisition date, processing date, pipeline version -behavior = {} - -# {'_id': '901c7e0e-2a7d-4600-aaa2-b4d40330d132', 'acquisition': None, 'created': '2024-05-07T16:39:45Z', 'data_description': None, 'describedBy': 'https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/metadata.py', 'external_links': [{'Code Ocean': '28552d8f-fc1b-4f3f-9a9e-7f89b6a78ae4'}], 'instrument': None, 'last_modified': '2024-06-13T22:28:57.365951', 'location': 's3://codeocean-s3datasetsbucket-eg0euwi4ez6z/28552d8f-fc1b-4f3f-9a9e-7f89b6a78ae4', 'metadata_status': 'Unknown', 'name': 'behavior_655019_2020-10-10_01-00-24_processed_2024-05-07_16-39-45', 'procedures': None, 'processing': None, 'rig': None, 'schema_version': '0.2.7', 'session': None, 'subject': None} diff --git a/src/aind_qc_portal/projects/smartspim_processing.py b/src/aind_qc_portal/projects/smartspim_processing.py deleted file mode 100644 index e69de29..0000000