From 61b349b3248425e2d1e29b3c3fdf632d18c893fc Mon Sep 17 00:00:00 2001
From: jtyoung84 <104453205+jtyoung84@users.noreply.github.com>
Date: Wed, 5 Jun 2024 16:35:12 -0700
Subject: [PATCH] feat: adds input data mount field (#116)

* feat: adds input data mount field
---
 README.md                                     |   1 +
 pyproject.toml                                |   2 +-
 .../configs/job_upload_template.py            |   4 ++++
 .../templates/index.html                      |   3 ++-
 tests/resources/job_upload_template.xlsx      | Bin 6523 -> 6536 bytes
 5 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index 8a68899..163116e 100644
--- a/README.md
+++ b/README.md
@@ -26,6 +26,7 @@ What each column means in the job submission template:
 
 - **project_name**: Project name. A full list can be downloaded at [Project Names](http://aind-metadata-service/project_names)
 - **process_capsule_id**: Optional Code Ocean capsule or pipeline to run when data is uploaded
+- **input_data_mount**: Optional data mount when running a custom pipeline
 - **platform**: For a list of platforms click [here](https://github.com/AllenNeuralDynamics/aind-data-schema/blob/main/src/aind_data_schema/models/platforms.py).
 - **acq_datetime**: The time that the data was acquired
 - **subject_id**: The unique id of the subject
diff --git a/pyproject.toml b/pyproject.toml
index 1cd4e72..0b1317e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,7 +21,7 @@ dependencies = [
     'pydantic>=2.0',
     'pydantic-settings>=2.0',
     'aind-data-schema==0.33.3',
-    'aind-data-transfer-models==0.4.0'
+    'aind-data-transfer-models==0.5.0'
 ]
 
 [project.optional-dependencies]
diff --git a/src/aind_data_transfer_service/configs/job_upload_template.py b/src/aind_data_transfer_service/configs/job_upload_template.py
index 2debb7a..7da80b1 100644
--- a/src/aind_data_transfer_service/configs/job_upload_template.py
+++ b/src/aind_data_transfer_service/configs/job_upload_template.py
@@ -21,6 +21,7 @@ class JobUploadTemplate:
     HEADERS = [
         "project_name",
         "process_capsule_id",
+        "input_data_mount",
         "platform",
         "acq_datetime",
         "subject_id",
@@ -34,6 +35,7 @@ class JobUploadTemplate:
         [
             "Behavior Platform",
             "1f999652-00a0-4c4b-99b5-64c2985ad070",
+            "data_mount",
             Platform.BEHAVIOR.abbreviation,
             datetime.datetime(2023, 10, 4, 4, 0, 0),
             "123456",
@@ -46,6 +48,7 @@ class JobUploadTemplate:
         [
             "Ophys Platform - SLAP2",
             None,
+            None,
             Platform.SMARTSPIM.abbreviation,
             datetime.datetime(2023, 3, 4, 16, 30, 0),
             "654321",
@@ -56,6 +59,7 @@ class JobUploadTemplate:
         [
             "Ephys Platform",
             None,
+            None,
             Platform.ECEPHYS.abbreviation,
             datetime.datetime(2023, 1, 30, 19, 1, 0),
             "654321",
diff --git a/src/aind_data_transfer_service/templates/index.html b/src/aind_data_transfer_service/templates/index.html
index 9c5dcfc..6ca3842 100644
--- a/src/aind_data_transfer_service/templates/index.html
+++ b/src/aind_data_transfer_service/templates/index.html
@@ -145,7 +145,7 @@ <h2>Submit Jobs</h2>
                     let jobsLength = jobs.length;
                     var table = document.createElement('table'), tr, td, row;
                     addTableRow(
-                        [ "project_name", "process_capsule_id", "s3_bucket", "platform", "subject_id", "acq_datetime", "metadata_dir", "modality", "modality.source" ],
+                        [ "project_name", "process_capsule_id", "input_data_mount", "s3_bucket", "platform", "subject_id", "acq_datetime", "metadata_dir", "modality", "modality.source" ],
                         table, tr, td, true
                     );
                     for (row = 0; row < jobsLength; row++) {
@@ -155,6 +155,7 @@ <h2>Submit Jobs</h2>
                         addTableRow(
                             [   { value: job.project_name,             rowspan: modalitiesLength },
                                 { value: job.process_capsule_id ?? "", rowspan: modalitiesLength },
+                                { value: job.input_data_mount ?? "",   rowspan: modalitiesLength },
                                 { value: job.s3_bucket,                rowspan: modalitiesLength },
                                 { value: job.platform.abbreviation,    rowspan: modalitiesLength },
                                 { value: job.subject_id,               rowspan: modalitiesLength },
diff --git a/tests/resources/job_upload_template.xlsx b/tests/resources/job_upload_template.xlsx
index 39ec6f75592aeb41b12cbeafda72ff0cadda7115..0ffe39d39d9ff4b6fdf77fba98651a644803303a 100644
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