Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

rROMA Installation Problem (R v.4.0.4) #9

Open
savarycl opened this issue Apr 5, 2021 · 0 comments
Open

rROMA Installation Problem (R v.4.0.4) #9

savarycl opened this issue Apr 5, 2021 · 0 comments

Comments

@savarycl
Copy link

savarycl commented Apr 5, 2021

Good morning,

I wanted to run rROMA to infer pathway activation scores based on gene expression data, but I found myself with the following error code:

install_github("Albluca/rRoma")
Downloading GitHub repo Albluca/rRoma@HEAD
Error in utils::download.file(url, path, method = method, quiet = quiet, :
download from 'https://api.github.com/repos/Albluca/rRoma/tarball/HEAD' failed

sessionInfo()
R version 4.0.4 (2021-02-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods base

other attached packages:
[1] devtools_2.3.2 usethis_2.0.1 qusage_2.24.0
[4] limma_3.46.0 GSVA_1.38.2 reshape2_1.4.4
[7] progeny_1.12.0 RColorBrewer_1.1-2 pheatmap_1.0.12
[10] gridExtra_2.3 vsn_3.58.0 ggplot2_3.3.3
[13] DESeq2_1.30.1 SummarizedExperiment_1.20.0 Biobase_2.50.0
[16] MatrixGenerics_1.2.1 matrixStats_0.58.0 GenomicRanges_1.42.0
[19] GenomeInfoDb_1.26.4 IRanges_2.24.1 S4Vectors_0.28.1
[22] BiocGenerics_0.36.0

loaded via a namespace (and not attached):
[1] colorspace_2.0-0 ellipsis_0.3.1 rprojroot_2.0.2 estimability_1.3
[5] XVector_0.30.0 fs_1.5.0 rstudioapi_0.13 farver_2.1.0
[9] hexbin_1.28.2 remotes_2.3.0 affyio_1.60.0 ggrepel_0.9.1
[13] bit64_4.0.5 AnnotationDbi_1.52.0 fansi_0.4.2 mvtnorm_1.1-1
[17] apeglm_1.12.0 splines_4.0.4 cachem_1.0.4 geneplotter_1.68.0
[21] pkgload_1.2.0 annotate_1.68.0 ashr_2.2-47 graph_1.68.0
[25] BiocManager_1.30.12 compiler_4.0.4 httr_1.4.2 emmeans_1.5.5-1
[29] tictoc_1.0 assertthat_0.2.1 Matrix_1.3-2 fastmap_1.1.0
[33] cli_2.4.0 prettyunits_1.1.1 tools_4.0.4 coda_0.19-4
[37] gtable_0.3.0 glue_1.4.2 GenomeInfoDbData_1.2.4 affy_1.68.0
[41] dplyr_1.0.5 tinytex_0.31 Rcpp_1.0.6 bbmle_1.0.23.1
[45] vctrs_0.3.7 preprocessCore_1.52.1 nlme_3.1-152 xfun_0.22
[49] stringr_1.4.0 ps_1.6.0 testthat_3.0.2 lifecycle_1.0.0
[53] irlba_2.3.3 XML_3.99-0.6 zlibbioc_1.36.0 MASS_7.3-53.1
[57] scales_1.1.1 curl_4.3 memoise_2.0.0 emdbook_1.3.12
[61] bdsmatrix_1.3-4 stringi_1.5.3 RSQLite_2.2.5 SQUAREM_2021.1
[65] genefilter_1.72.1 desc_1.3.0 pkgbuild_1.2.0 BiocParallel_1.24.1
[69] truncnorm_1.0-8 rlang_0.4.10 pkgconfig_2.0.3 bitops_1.0-6
[73] lattice_0.20-41 invgamma_1.1 purrr_0.3.4 labeling_0.4.2
[77] bit_4.0.4 tidyselect_1.1.0 processx_3.5.1 GSEABase_1.52.1
[81] plyr_1.8.6 magrittr_2.0.1 R6_2.5.0 fftw_1.0-6
[85] generics_0.1.0 DelayedArray_0.16.3 DBI_1.1.1 pillar_1.5.1
[89] withr_2.4.1 survival_3.2-10 RCurl_1.98-1.3 mixsqp_0.3-43
[93] tibble_3.1.0 crayon_1.4.1 utf8_1.2.1 locfit_1.5-9.4
[97] grid_4.0.4 blob_1.2.1 callr_3.6.0 digest_0.6.27
[101] xtable_1.8-4 tidyr_1.1.3 numDeriv_2016.8-1.1 munsell_0.5.0
[105] sessioninfo_1.1.1

Thanks in advance for your answer.

C.S

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant