- add check if
fDisc
is missing when minimum legal length is used
- fix plotting for the minimum legal length in LBSPRsim
- LBSPR Shiny App: Made colors the same on both maturity plots
- fix minor issue with table showing metadata for loaded dataset
- fix minor UI error in Examine Results tab before data is loaded and model has been fit
- fixed minor bugs in Shiny app
- fix issue with
plotSize
introduced with latest version ofggplot2
- fix typo in vignette causing a warning on CRAN
Minor patch to comply with new R standard of class(matrix(1:4,2,2))
= matrix
and array
- Reduce font size for warnings of high F/M etc in
plotSize
, add argument to control font size, and setinc.text=FALSE
as default.
- fix bug in Shiny app reading in data
- modify SPR circle plot used in the Shiny app.
- fix issue in cpp code that was being flagged by CRAN checks
- fix missing variable M-at-length in LBSPRfit function (thanks to Yves Reecht for picking this up)
- add option to specify scales for axes in plotSize
- modify plotTarg function and add features
- 'absel' fitting routine has been coded in cpp with major improvement in speed
- Shiny applications have now been added to the package. Launch the applications using the
Shiny
function: e.g.,Shiny("LBSPR")
orShiny("Sim")
- the relative spawning stock biomass (SSB) is now calculated and reported in the simulation model
- modified the plotSim function so that it now produces several plots including SSB/SSB0 to yield and spr plot
- split functions in functions.r into separate r files
- updated the vignette
- added packages required by the Shiny applications as dependencies
- fixed minor bug in standard error calculation
- fixed bug in plotEsts when F/M estimates are high
The LBSPR package has now been released on CRAN!
See http://adrianhordyk.github.io/LBSPR for information and examples that describe the package.