From 0667e1f591270a75e1b8fd5b56baeab7e174532a Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Sat, 5 Aug 2023 10:44:55 +0000 Subject: [PATCH] Commit from GitHub Actions (Generate References) --- bibtex/references.bib | 1042 ++++++++++++++++++++--------------------- 1 file changed, 521 insertions(+), 521 deletions(-) diff --git a/bibtex/references.bib b/bibtex/references.bib index c4ea677..f016fae 100644 --- a/bibtex/references.bib +++ b/bibtex/references.bib @@ -1,28 +1,3 @@ -@article{Caramelli_2018, - doi = {10.1038/s41467-018-05828-8}, - url = {https://doi.org/10.1038%2Fs41467-018-05828-8}, - year = 2018, - month = {aug}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {9}, - number = {1}, - author = {Dario Caramelli and Daniel Salley and Alon Henson and Gerardo Aragon Camarasa and Salah Sharabi and Graham Keenan and Leroy Cronin}, - title = {Networking chemical robots for reaction multitasking}, - journal = {Nature Communications} -} -@article{Arnold_2022, - doi = {10.1038/d41586-022-01618-x}, - url = {https://doi.org/10.1038%2Fd41586-022-01618-x}, - year = 2022, - month = {jun}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {606}, - number = {7914}, - pages = {612--613}, - author = {Carrie Arnold}, - title = {Cloud labs: where robots do the research}, - journal = {Nature} -} @article{May_2019, doi = {10.1038/d41586-019-01590-z}, url = {https://doi.org/10.1038%2Fd41586-019-01590-z}, @@ -36,39 +11,75 @@ @article{May_2019 title = {A {DIY} approach to automating your lab}, journal = {Nature} } -@article{Green_2022, - doi = {10.1063/5.0118872}, - url = {https://doi.org/10.1063%2F5.0118872}, +@article{Pomberger_2023, + doi = {10.1016/j.cej.2022.139099}, + url = {https://doi.org/10.1016%2Fj.cej.2022.139099}, + year = 2023, + month = {jan}, + publisher = {Elsevier {BV}}, + volume = {451}, + pages = {139099}, + author = {A. 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Foster}, + title = {Linking scientific instruments and computation: Patterns, technologies, and experiences}, + journal = {Patterns} } -@article{Ohkubo_2021, - doi = {10.1016/j.mtphys.2020.100296}, - url = {https://doi.org/10.1016%2Fj.mtphys.2020.100296}, +@article{H_se_2020, + doi = {10.26434/chemrxiv.12097908.v1}, + url = {https://doi.org/10.26434%2Fchemrxiv.12097908.v1}, + year = 2020, + month = {apr}, + publisher = {American Chemical Society ({ACS})}, + author = {Florian Häse and Teresa Tamayo-Mendoza and Carmen Boixo and Jonathan Romero and Loic Roch and Alan Aspuru-Guzik}, + title = {Autonomous Titration for Chemistry Classrooms: Preparing Students for Digitized Chemistry Laboratories} +} +@misc{https://doi.org/10.5281/zenodo.5903364, + doi = {10.5281/ZENODO.5903364}, + url = {https://zenodo.org/record/5903364}, + author = {Cunningham, Will and Esquivel, Alejandro and Jao, Casey and {Faiyaz Hasan} and Bala, Venkat and {Sankalp Sanand} and {Prasanna Venkatesh} and {Madhur Tandon} and {Okechukwu Emmanuel Ochia} and {Dwelsch-Esi} and {Jkanem} and {HaimHorowitzAgnostiq} and Rosen, Andrew S. and {Ruihao Li} and Neagle, Scott Wyman and {Valkostadinov} and {Aravind} and Ghukasyan, Ara and {Poojith U Rao} and {Sayandip Dutta} and Hughes, Anna and {RaviPsiog} and {Udayan} and {Akalanka} and Obasi, Amara and {Divyanshu Singh} and {Janosh Riebesell} and {Rachana Uniyal}}, + title = {AgnostiqHQ/covalent: v0.226.0-rc.0}, + publisher = {Zenodo}, + year = {2023}, + copyright = {Open Access} +} + +@article{MacLeod_2021, + doi = {10.1038/s41563-021-01156-3}, + url = {https://doi.org/10.1038%2Fs41563-021-01156-3}, year = 2021, - month = {jan}, - publisher = {Elsevier {BV}}, - volume = {16}, - pages = {100296}, - author = {I. Ohkubo and Z. Hou and J.N. Lee and T. Aizawa and M. Lippmaa and T. Chikyow and K. Tsuda and T. Mori}, - title = {Realization of closed-loop optimization of epitaxial titanium nitride thin-film growth via machine learning}, - journal = {Materials Today Physics} + month = {dec}, + publisher = {Springer Science and Business Media {LLC}}, + volume = {21}, + number = {7}, + pages = {722--726}, + author = {Benjamin P. MacLeod and Fraser G. L. Parlane and Amanda K. Brown and Jason E. Hein and Curtis P. Berlinguette}, + title = {Flexible automation accelerates materials discovery}, + journal = {Nature Materials} } -@article{Rapp_2023, - doi = {10.1101/2023.05.20.541582}, - url = {https://doi.org/10.1101%2F2023.05.20.541582}, - year = 2023, - month = {may}, - publisher = {Cold Spring Harbor Laboratory}, - author = {Jacob T. Rapp and Bennett J. Bremer and Philip A. Romero}, - title = {Self-driving laboratories to autonomously navigate the protein fitness landscape} +@article{Stach_2021, + doi = {10.1016/j.matt.2021.06.036}, + url = {https://doi.org/10.1016%2Fj.matt.2021.06.036}, + year = 2021, + month = {sep}, + publisher = {Elsevier {BV}}, + volume = {4}, + number = {9}, + pages = {2702--2726}, + author = {Eric Stach and Brian DeCost and A. Gilad Kusne and Jason Hattrick-Simpers and Keith A. Brown and Kristofer G. Reyes and Joshua Schrier and Simon Billinge and Tonio Buonassisi and Ian Foster and Carla P. Gomes and John M. Gregoire and Apurva Mehta and Joseph Montoya and Elsa Olivetti and Chiwoo Park and Eli Rotenberg and Semion K. Saikin and Sylvia Smullin and Valentin Stanev and Benji Maruyama}, + title = {Autonomous experimentation systems for materials development: A community perspective}, + journal = {Matter} } @article{Seifrid_2022, doi = {10.1021/acs.accounts.2c00220}, @@ -83,64 +94,43 @@ @article{Seifrid_2022 title = {Autonomous Chemical Experiments: Challenges and Perspectives on Establishing a Self-Driving Lab}, journal = {Accounts of Chemical Research} } -@article{Maruyama_2022, - doi = {10.1557/s43577-022-00466-4}, - url = {https://doi.org/10.1557%2Fs43577-022-00466-4}, +@article{Maffettone_2022, + doi = {10.1016/j.xcrp.2022.101112}, + url = {https://doi.org/10.1016%2Fj.xcrp.2022.101112}, year = 2022, month = {nov}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {47}, + publisher = {Elsevier {BV}}, + volume = {3}, number = {11}, - pages = {1154--1164}, - author = {B. Maruyama and J. Hattrick-Simpers and W. Musinski and L. Graham-Brady and K. Li and J. Hollenbach and A. Singh and M. L. Taheri}, - title = {Artificial intelligence for materials research at extremes}, - journal = {{MRS} Bulletin} + pages = {101112}, + author = {Phillip M. Maffettone and Stuart Campbell and Marcus D. Hanwell and Stuart Wilkins and Daniel Olds}, + title = {Delivering real-time multi-modal materials analysis with enterprise beamlines}, + journal = {Cell Reports Physical Science} } -@article{Seifrid_2022, - doi = {10.1016/j.matt.2022.05.035}, - url = {https://doi.org/10.1016%2Fj.matt.2022.05.035}, +@article{Steiner_2019, + doi = {10.1126/science.aav2211}, + url = {https://doi.org/10.1126%2Fscience.aav2211}, + year = 2019, + month = {jan}, + publisher = {American Association for the Advancement of Science ({AAAS})}, + volume = {363}, + number = {6423}, + author = {Sebastian Steiner and Jakob Wolf and Stefan Glatzel and Anna Andreou and Jaros{\l}aw M. Granda and Graham Keenan and Trevor Hinkley and Gerardo Aragon-Camarasa and Philip J. Kitson and Davide Angelone and Leroy Cronin}, + title = {Organic synthesis in a modular robotic system driven by a chemical programming language}, + journal = {Science} +} +@article{Leong_2022, + doi = {10.1016/j.matt.2022.08.017}, + url = {https://doi.org/10.1016%2Fj.matt.2022.08.017}, year = 2022, - month = {jul}, + month = {oct}, publisher = {Elsevier {BV}}, volume = {5}, - number = {7}, - pages = {1972--1976}, - author = {Martin Seifrid and Jason Hattrick-Simpers and Al{\'{a}}n Aspuru-Guzik and Tom Kalil and Steve Cranford}, - title = {Reaching critical {MASS}: Crowdsourcing designs for the next generation of materials acceleration platforms}, - journal = {Matter} -} -@article{Goldman_2022, - doi = {10.1021/acs.jmedchem.2c00334}, - url = {https://doi.org/10.1021%2Facs.jmedchem.2c00334}, - year = 2022, - month = {may}, - publisher = {American Chemical Society ({ACS})}, - volume = {65}, number = {10}, - pages = {7073--7087}, - author = {Brian Goldman and Steven Kearnes and Trevor Kramer and Patrick Riley and W. Patrick Walters}, - title = {Defining Levels of Automated Chemical Design}, - journal = {Journal of Medicinal Chemistry} -} -@misc{https://doi.org/10.48550/arxiv.2304.13927, - doi = {10.48550/ARXIV.2304.13927}, - url = {https://arxiv.org/abs/2304.13927}, - author = {Tamura, Ryo and Tsuda, Koji and Matsuda, Shoichi}, - keywords = {Materials Science (cond-mat.mtrl-sci), Artificial Intelligence (cs.AI), Robotics (cs.RO), FOS: Physical sciences, FOS: Physical sciences, FOS: Computer and information sciences, FOS: Computer and information sciences}, - title = {NIMS-OS: An automation software to implement a closed loop between artificial intelligence and robotic experiments in materials science}, - publisher = {arXiv}, - year = {2023}, - copyright = {Creative Commons Attribution 4.0 International} -} - -@article{Baird_2023, - doi = {10.26434/chemrxiv-2023-xgx5h}, - url = {https://doi.org/10.26434%2Fchemrxiv-2023-xgx5h}, - year = 2023, - month = {jan}, - publisher = {American Chemical Society ({ACS})}, - author = {Sterling G. Baird and Taylor D. Sparks}, - title = {Build instructions for Closed-loop Spectroscopy Lab: Light-mixing Demo} + pages = {3124--3134}, + author = {Chang Jie Leong and Kai Yuan Andre Low and Jose Recatala-Gomez and Pablo Quijano Velasco and Eleonore Vissol-Gaudin and Jin Da Tan and Balamurugan Ramalingam and Riko I Made and Shreyas Dinesh Pethe and Saumya Sebastian and Yee-Fun Lim and Zi Hui Jonathan Khoo and Yang Bai and Jayce Jian Wei Cheng and Kedar Hippalgaonkar}, + title = {An object-oriented framework to enable workflow evolution across materials acceleration platforms}, + journal = {Matter} } @article{Koscher_2023, doi = {10.26434/chemrxiv-2023-r7b01}, @@ -151,118 +141,101 @@ @article{Koscher_2023 author = {Brent Koscher and Richard B. Canty and Matthew A. McDonald and Kevin P. Greenman and Charles J. McGill and Camille L. Bilodeau and Wengong Jin and Haoyang Wu and Florence H. Vermeire and Brooke Jin and Travis Hart and Timothy Kulesza and Shih-Cheng Li and Tommi S. Jaakkola and Regina Barzilay and Rafael G{\'{o}}mez-Bombarelli and William H. Green and Klavs F Jensen}, title = {Autonomous, multi-property-driven molecular discovery: from predictions to measurements and back} } -@article{Roccapriore_2022, - doi = {10.1002/advs.202203422}, - url = {https://doi.org/10.1002%2Fadvs.202203422}, +@article{Montoya_2022, + doi = {10.1063/5.0076324}, + url = {https://doi.org/10.1063%2F5.0076324}, year = 2022, - month = {nov}, - publisher = {Wiley}, + month = {mar}, + publisher = {{AIP} Publishing}, volume = {9}, - number = {36}, - author = {Kevin M. Roccapriore and Sergei V. Kalinin and Maxim Ziatdinov}, - title = {Physics Discovery in Nanoplasmonic Systems via Autonomous Experiments in Scanning Transmission Electron Microscopy}, - journal = {Advanced Science} + number = {1}, + pages = {011405}, + author = {Joseph H. Montoya and Muratahan Aykol and Abraham Anapolsky and Chirranjeevi B. Gopal and Patrick K. Herring and Jens S. Hummelsh{\o}j and Linda Hung and Ha-Kyung Kwon and Daniel Schweigert and Shijing Sun and Santosh K. Suram and Steven B. Torrisi and Amalie Trewartha and Brian D. Storey}, + title = {Toward autonomous materials research: Recent progress and future challenges}, + journal = {Applied Physics Reviews} } -@article{Roch_2020, - doi = {10.1371/journal.pone.0229862}, - url = {https://doi.org/10.1371%2Fjournal.pone.0229862}, +@article{Coley_2020, + doi = {10.1002/anie.201909989}, + url = {https://doi.org/10.1002%2Fanie.201909989}, year = 2020, - month = {apr}, - publisher = {Public Library of Science ({PLoS})}, - volume = {15}, - number = {4}, - pages = {e0229862}, - author = {Loïc M. Roch and Florian Häse and Christoph Kreisbeck and Teresa Tamayo-Mendoza and Lars P. E. Yunker and Jason E. Hein and Al{\'{a}}n Aspuru-Guzik}, - editor = {Jianjun Hu}, - title = {{ChemOS}: An orchestration software to democratize autonomous discovery}, - journal = {{PLOS} {ONE}} + month = {jun}, + publisher = {Wiley}, + volume = {59}, + number = {52}, + pages = {23414--23436}, + author = {Connor W. Coley and Natalie S. Eyke and Klavs F. Jensen}, + title = {Autonomous Discovery in the Chemical Sciences Part{\hspace{0.25em}}{II}: Outlook}, + journal = {Angewandte Chemie International Edition} } -@article{H_se_2020, - doi = {10.26434/chemrxiv.12097908.v1}, - url = {https://doi.org/10.26434%2Fchemrxiv.12097908.v1}, - year = 2020, - month = {apr}, - publisher = {American Chemical Society ({ACS})}, - author = {Florian Häse and Teresa Tamayo-Mendoza and Carmen Boixo and Jonathan Romero and Loic Roch and Alan Aspuru-Guzik}, - title = {Autonomous Titration for Chemistry Classrooms: Preparing Students for Digitized Chemistry Laboratories} +@article{Rapp_2023, + doi = {10.1101/2023.05.20.541582}, + url = {https://doi.org/10.1101%2F2023.05.20.541582}, + year = 2023, + month = {may}, + publisher = {Cold Spring Harbor Laboratory}, + author = {Jacob T. Rapp and Bennett J. Bremer and Philip A. Romero}, + title = {Self-driving laboratories to autonomously navigate the protein fitness landscape} } -@article{Saar_2022, - doi = {10.1557/s43577-022-00430-2}, - url = {https://doi.org/10.1557%2Fs43577-022-00430-2}, +@article{Rooney_2022, + doi = {10.1039/d2dd00029f}, + url = {https://doi.org/10.1039%2Fd2dd00029f}, year = 2022, - month = {sep}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {47}, - number = {9}, - pages = {881--885}, - author = {Logan Saar and Haotong Liang and Alex Wang and Austin McDannald and Efrain Rodriguez and Ichiro Takeuchi and A. Gilad Kusne}, - title = {The {LEGOLAS} Kit: A low-cost robot science kit for education with symbolic regression for hypothesis discovery and validation}, - journal = {{MRS} Bulletin} + publisher = {Royal Society of Chemistry ({RSC})}, + volume = {1}, + number = {4}, + pages = {382--389}, + author = {Michael B. Rooney and Benjamin P. MacLeod and Ryan Oldford and Zachary J. Thompson and Kolby L. White and Justin Tungjunyatham and Brian J. Stankiewicz and Curtis P. Berlinguette}, + title = {A self-driving laboratory designed to accelerate the discovery of adhesive materials}, + journal = {Digital Discovery} } -@article{Deneault_2021, - doi = {10.1557/s43577-021-00051-1}, - url = {https://doi.org/10.1557%2Fs43577-021-00051-1}, +@article{Ohkubo_2021, + doi = {10.1016/j.mtphys.2020.100296}, + url = {https://doi.org/10.1016%2Fj.mtphys.2020.100296}, year = 2021, - month = {apr}, - publisher = {Springer Science and Business Media {LLC}}, - volume = {46}, - number = {7}, - pages = {566--575}, - author = {James R. Deneault and Jorge Chang and Jay Myung and Daylond Hooper and Andrew Armstrong and Mark Pitt and Benji Maruyama}, - title = {Toward autonomous additive manufacturing: Bayesian optimization on a 3D printer}, - journal = {{MRS} Bulletin} -} -@article{Johnson_2015, - doi = {10.1177/2211068214553022}, - url = {https://doi.org/10.1177%2F2211068214553022}, - year = 2015, - month = {feb}, + month = {jan}, publisher = {Elsevier {BV}}, - volume = {20}, - number = {1}, - pages = {10--16}, - author = {Jami L. Johnson and Henrik tom Wörden and Kasper van Wijk}, - title = {{PLACE}: An Open-Source Python Package for Laboratory Automation, Control, and Experimentation}, - journal = {{SLAS} Technology} -} -@article{Kalinin_2021, - doi = {10.1021/acsnano.1c02104}, - url = {https://doi.org/10.1021%2Facsnano.1c02104}, - year = 2021, - month = {jul}, - publisher = {American Chemical Society ({ACS})}, - volume = {15}, - number = {8}, - pages = {12604--12627}, - author = {Sergei V. 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Mori}, + title = {Realization of closed-loop optimization of epitaxial titanium nitride thin-film growth via machine learning}, + journal = {Materials Today Physics} } -@article{Montoya_2022, - doi = {10.1063/5.0076324}, - url = {https://doi.org/10.1063%2F5.0076324}, - year = 2022, - month = {mar}, - publisher = {{AIP} Publishing}, - volume = {9}, +@article{Nikolaev_2016, + doi = {10.1038/npjcompumats.2016.31}, + url = {https://doi.org/10.1038%2Fnpjcompumats.2016.31}, + year = 2016, + month = {oct}, + publisher = {Springer Science and Business Media {LLC}}, + volume = {2}, number = {1}, - pages = {011405}, - author = {Joseph H. Montoya and Muratahan Aykol and Abraham Anapolsky and Chirranjeevi B. Gopal and Patrick K. Herring and Jens S. Hummelsh{\o}j and Linda Hung and Ha-Kyung Kwon and Daniel Schweigert and Shijing Sun and Santosh K. Suram and Steven B. Torrisi and Amalie Trewartha and Brian D. Storey}, - title = {Toward autonomous materials research: Recent progress and future challenges}, - journal = {Applied Physics Reviews} + author = {Pavel Nikolaev and Daylond Hooper and Frederick Webber and Rahul Rao and Kevin Decker and Michael Krein and Jason Poleski and Rick Barto and Benji Maruyama}, + title = {Autonomy in materials research: a case study in carbon nanotube growth}, + journal = {npj Computational Materials} } -@article{Coley_2020, - doi = {10.1002/anie.201909989}, - url = {https://doi.org/10.1002%2Fanie.201909989}, +@article{Dave_2020, + doi = {10.1016/j.xcrp.2020.100264}, + url = {https://doi.org/10.1016%2Fj.xcrp.2020.100264}, year = 2020, - month = {jun}, - publisher = {Wiley}, - volume = {59}, - number = {52}, - pages = {23414--23436}, - author = {Connor W. Coley and Natalie S. Eyke and Klavs F. Jensen}, - title = {Autonomous Discovery in the Chemical Sciences Part{\hspace{0.25em}}{II}: Outlook}, - journal = {Angewandte Chemie International Edition} + month = {dec}, + publisher = {Elsevier {BV}}, + volume = {1}, + number = {12}, + pages = {100264}, + author = {Adarsh Dave and Jared Mitchell and Kirthevasan Kandasamy and Han Wang and Sven Burke and Biswajit Paria and Barnab{\'{a}}s P{\'{o}}czos and Jay Whitacre and Venkatasubramanian Viswanathan}, + title = {Autonomous Discovery of Battery Electrolytes with Robotic Experimentation and Machine Learning}, + journal = {Cell Reports Physical Science} +} +@article{MacLeod_2020, + doi = {10.1126/sciadv.aaz8867}, + url = {https://doi.org/10.1126%2Fsciadv.aaz8867}, + year = 2020, + month = {may}, + publisher = {American Association for the Advancement of Science ({AAAS})}, + volume = {6}, + number = {20}, + author = {B. P. MacLeod and F. G. L. Parlane and T. D. Morrissey and F. Häse and L. M. Roch and K. E. Dettelbach and R. Moreira and L. P. E. Yunker and M. B. Rooney and J. R. Deeth and V. Lai and G. J. Ng and H. Situ and R. H. Zhang and M. S. Elliott and T. H. Haley and D. J. Dvorak and A. Aspuru-Guzik and J. E. Hein and C. P. Berlinguette}, + title = {Self-driving laboratory for accelerated discovery of thin-film materials}, + journal = {Science Advances} } @article{Rahmanian_2022, doi = {10.1002/admi.202101987}, @@ -277,82 +250,231 @@ @article{Rahmanian_2022 title = {Enabling Modular Autonomous Feedback-Loops in Materials Science through Hierarchical Experimental Laboratory Automation and Orchestration}, journal = {Advanced Materials Interfaces} } -@article{MacLeod_2021, - doi = {10.1038/s41563-021-01156-3}, - url = {https://doi.org/10.1038%2Fs41563-021-01156-3}, +@article{Roch_2020, + doi = {10.1371/journal.pone.0229862}, + url = {https://doi.org/10.1371%2Fjournal.pone.0229862}, + year = 2020, + month = {apr}, + publisher = {Public Library of Science ({PLoS})}, + volume = {15}, + number = {4}, + pages = {e0229862}, + author = {Loïc M. Roch and Florian Häse and Christoph Kreisbeck and Teresa Tamayo-Mendoza and Lars P. E. Yunker and Jason E. Hein and Al{\'{a}}n Aspuru-Guzik}, + editor = {Jianjun Hu}, + title = {{ChemOS}: An orchestration software to democratize autonomous discovery}, + journal = {{PLOS} {ONE}} +} +@article{Vaddi_2022, + doi = {10.1039/d2dd00025c}, + url = {https://doi.org/10.1039%2Fd2dd00025c}, + year = 2022, + publisher = {Royal Society of Chemistry ({RSC})}, + volume = {1}, + number = {4}, + pages = {502--510}, + author = {Kiran Vaddi and Huat Thart Chiang and Lilo D. 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