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dtol_plant_paths.txt
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dtol_plant_paths.txt
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/lustre/scratch124/tol/projects/darwin/data/dicots/Ajuga_chamaepitys/assembly/curated/daAjuCham1.1/daAjuCham1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Arctium_minus/assembly/curated/daArcMinu1.1/daArcMinu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Ballota_nigra/assembly/curated/daBalNigr1.1/daBalNigr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Calendula_officinalis/assembly/curated/daCalOffi1.1/daCalOffi1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Calystegia_soldanella/assembly/curated/daCalSold1.1/daCalSold1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Convolvulus_arvensis/assembly/curated/daConArve2.1/daConArve2.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Cruciata_laevipes/assembly/curated/daCruLaev1.1/daCruLaev1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Euphrasia_confusa/assembly/curated/daEupConf1.1/daEupConf1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Filago_lutescens/assembly/curated/daFilLute1.1/daFilLute1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Galium_aparine/assembly/curated/daGalApar1.1/daGalApar1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Galeopsis_tetrahit/assembly/curated/daGalTetr1.1/daGalTetr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Gnaphalium_supinum/assembly/curated/daGnaSupi1.1/daGnaSupi1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Gnaphalium_uliginosum/assembly/curated/daGnaUlig1.1/daGnaUlig1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Jasione_montana/assembly/curated/daJasMont1.1/daJasMont1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Lamium_amplexicaule/assembly/curated/daLamAmpl1.1/daLamAmpl1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Ligustrum_vulgare/assembly/curated/daLigVulg1.1/daLigVulg1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Linaria_vulgaris/assembly/curated/daLinVulg1.1/daLinVulg1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Logfia_minima/assembly/curated/daLogMini1.1/daLogMini1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Lycopus_europaeus/assembly/curated/daLycEuro1.1/daLycEuro1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Matricaria_chamomilla/assembly/curated/daMatCham1.1/daMatCham1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Matricaria_discoidea/assembly/curated/daMatDisc1.1/daMatDisc1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Pentaglottis_sempervirens/assembly/curated/daPenSemp1.1/daPenSemp1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Pseudognaphalium_luteoalbum/assembly/curated/daPseLute1.1/daPseLute1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Pulicaria_dysenterica/assembly/curated/daPulDyse1.1/daPulDyse1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Rhinanthus_minor/assembly/curated/daRhiMino1.1/daRhiMino1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Sambucus_nigra/assembly/curated/daSamNigr1.1/daSamNigr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Scutellaria_galericulata/assembly/curated/daScuGale1.1/daScuGale1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Scutellaria_minor/assembly/curated/daScuMino1.0/daScuMino1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Sherardia_arvensis/assembly/curated/daSheArve1.1/daSheArve1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Solanum_dulcamara/assembly/curated/daSolDulc1.1/daSolDulc1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Solanum_nigrum/assembly/curated/daSolNigr1.1/daSolNigr1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Tanacetum_parthenium/assembly/curated/daTanPart1.1/daTanPart1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Tanacetum_vulgare/assembly/curated/daTanVulg1.1/daTanVulg1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Tragopogon_pratensis/assembly/curated/daTraPrat1.1/daTraPrat1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Veronica_arvensis/assembly/curated/daVerArve1.1/daVerArve1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Verbena_officinalis/assembly/curated/daVerOffi1.1/daVerOffi1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Veronica_serpyllifolia/assembly/curated/daVerSerp1.1/daVerSerp1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Verbascum_thapsus/assembly/curated/daVerThap1.1/daVerThap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Veronica_triphyllos/assembly/curated/daVerTrip1.1/daVerTrip1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Veronica_verna/assembly/curated/daVerVern1.1/daVerVern1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Agrostemma_githago/assembly/curated/dcAgrGith1.1/dcAgrGith1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Arenaria_serpyllifolia/assembly/curated/dcAreSerp1.1/dcAreSerp1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Chenopodium_album/assembly/curated/dcCheAlbu1.1/dcCheAlbu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Fallopia_convolvulus/assembly/curated/dcFalConv1.1/dcFalConv1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Moehringia_trinervia/assembly/curated/dcMoeTrin1.1/dcMoeTrin1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Oxyria_digyna/assembly/curated/dcOxyDigy1.1/dcOxyDigy1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Persicaria_maculosa/assembly/curated/dcPerMacu1.1/dcPerMacu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Polygonum_aviculare/assembly/curated/dcPolAvic1.1/dcPolAvic1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Polygonum_maritimum/assembly/curated/dcPolMari1.1/dcPolMari1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Salicornia_ramosissima/assembly/curated/dcSalRamo1.1/dcSalRamo1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Spergularia_bocconei/assembly/curated/dcSpeBocc1.1/dcSpeBocc1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Spergularia_marina/assembly/curated/dcSpeMari1.1/dcSpeMari1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Tamarix_gallica/assembly/curated/dcTamGall1.1/dcTamGall1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Arabis_hirsuta/assembly/curated/ddAraHirs1.1/ddAraHirs1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Arabidopsis_thaliana/assembly/curated/ddAraThal4.1/ddAraThal4.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Barbarea_vulgaris/assembly/curated/ddBarVulg1.1/ddBarVulg1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Brassica_nigra/assembly/curated/ddBraNigr2.1/ddBraNigr2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Calluna_vulgaris/assembly/curated/ddCalVulg4.1/ddCalVulg4.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Cardamine_flexuosa/assembly/curated/ddCarFlex1.1/ddCarFlex1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Cardamine_hirsuta/assembly/curated/ddCarHirs1.1/ddCarHirs1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Draba_incana/assembly/curated/ddDraInca1.1/ddDraInca1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Draba_verna/assembly/curated/ddDraVern1.1/ddDraVern1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Euphorbia_lathyris/assembly/curated/ddEupLath1.1/ddEupLath1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Euphorbia_peplus/assembly/curated/ddEupPepu3.1/ddEupPepu3.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hibiscus_tridactylites/assembly/curated/ddHibTrid2.1/ddHibTrid2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hypericum_androsaemum/assembly/curated/ddHypAndr1.1/ddHypAndr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hypericum_hirsutum/assembly/curated/ddHypHirs1.1/ddHypHirs1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hypericum_pulchrum/assembly/curated/ddHypPulc1.1/ddHypPulc1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Lepidium_didymum/assembly/curated/ddLepDidy1.1/ddLepDidy1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Mercurialis_annua/assembly/curated/ddMerAnnu1.1/ddMerAnnu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Nasturtium_officinale/assembly/curated/ddNasOffi1.1/ddNasOffi1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Populus_nigra/assembly/curated/ddPopNigr1.1/ddPopNigr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Populus_tremula/assembly/curated/ddPopTrem1.1/ddPopTrem1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Primula_veris/assembly/curated/ddPriVeri1.1/ddPriVeri1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Primula_vulgaris/assembly/curated/ddPriVulg1.1/ddPriVulg1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Salix_caprea/assembly/curated/ddSalCapr1.1/ddSalCapr1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Samolus_valerandi/assembly/curated/ddSamVale1.1/ddSamVale1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Vaccinium_vitis_idaea/assembly/curated/ddVacViti1.1/ddVacViti1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Viola_odorata/assembly/curated/ddVioOdor1.1/ddVioOdor1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Alnus_glutinosa/assembly/curated/dhAlnGlut1.1_newer/dhAlnGlut1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Fagus_sylvatica/assembly/curated/dhFagSylv1.1/dhFagSylv1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Myrica_gale/assembly/curated/dhMyrGale1.1/dhMyrGale1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Quercus_cerris/assembly/curated/dhQueCerr2.1/dhQueCerr2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Quercus_petraea/assembly/curated/dhQuePetr1.1/dhQuePetr1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Quercus_robur/assembly/curated/dhQueRobu3.1/dhQueRobu3.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Impatiens_glandulifera/assembly/curated/dImpGla2.1/dImpGla2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Adonis_annua/assembly/curated/dmAdoAnnu1.1/dmAdoAnnu1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Berberis_vulgaris/assembly/curated/dmBerVulg1.1/dmBerVulg1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Acaena_ovalifolia/assembly/curated/drAcaOval1.1/drAcaOval1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Acer_campestre/assembly/curated/drAceCamp1.0/drAceCamp1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Ailanthus_altissima/assembly/curated/drAilAlti1.1/drAilAlti1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Astragalus_alpinus/assembly/curated/drAstAlpi1.1/drAstAlpi1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Astragalus_glycyphyllos/assembly/curated/drAstGlyc1.1/drAstGlyc1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Buxus_sempervirens/assembly/curated/drBuxSemp1.1/drBuxSemp1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Chamaenerion_angustifolium/assembly/curated/drChaAngu1.1/drChaAngu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Comarum_palustre/assembly/curated/drComPalu1.1/drComPalu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Cornus_suecica/assembly/curated/drCorSuec2.1/drCorSuec2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Crataegus_laevigata/assembly/curated/drCraLaev2.1/drCraLaev2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Dryas_octopetala/assembly/curated/drDryOcto1.1/drDryOcto1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Erodium_maritimum/assembly/curated/drEroMari8.1/drEroMari8.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Euonymus_europaeus/assembly/curated/drEuoEuro1.1/drEuoEuro1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Filipendula_ulmaria/assembly/curated/drFilUlma1.1/drFilUlma1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Frangula_alnus/assembly/curated/drFraAlnu1.1/drFraAlnu1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Fragaria_moschata/assembly/curated/drFraMosc1.1/drFraMosc1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Fragaria_vesca/assembly/curated/drFraVesc1.1/drFraVesc1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Geranium_rotundifolium/assembly/curated/drGerRotu1.1/drGerRotu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Geum_rivale/assembly/curated/drGeuRiva1.1/drGeuRiva1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Geum_urbanum/assembly/curated/drGeuUrba1.1/drGeuUrba1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hedera_helix/assembly/curated/drHedHeli1.1/drHedHeli1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Humulus_lupulus/assembly/curated/drHumLupu1.1/drHumLupu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Hydrocotyle_vulgaris/assembly/curated/drHydVulg1.1/drHydVulg1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Ilex_aquifolium/assembly/curated/drIleAqui2.1/drIleAqui2.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Laburnum_anagyroides/assembly/curated/drLabAnag1.1/drLabAnag1.hap1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Lathyrus_aphaca/assembly/curated/drLatApha1.1/drLatApha1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome5.2/drMalDome5.2.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome5.3/drMalDome5.3.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome10.2/drMalDome10.2.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome11.2/drMalDome11.2.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome58.2/drMalDome58.2.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_domestica/assembly/curated/drMalDome58.3/drMalDome58.3.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_x_robusta/assembly/curated/drMalRobu1.1/drMalRobu1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Malus_sylvestris/assembly/curated/drMalSylv7.2/drMalSylv7.2.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Medicago_arabica/assembly/curated/drMedArab1.1/drMedArab1.1.primary.fa.gz
/lustre/scratch124/tol/projects/darwin/data/dicots/Medicago_lupulina/assembly/curated/drMedLupu1.1/drMedLupu1.1.primary.fa.gz
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