problem reading trees of my own

[GoogleCodeExporter]

Hi,
I need to use only the robinson foulds distance function. I am using the 0.3.4 
version and assigning the function the files attached. I get:

se.cbb.jprime.io.NewickIOException: Error parsing Newick tree. First 100 
remaining unparsed characters:

    at se.cbb.jprime.io.NewickTreeReader.readTrees(NewickTreeReader.java:58)
    at se.cbb.jprime.io.NewickTreeReader.readTrees(NewickTreeReader.java:84)
    at jprime_test.test.main(test.java:67)
Caused by: se.cbb.jprime.io.NewickIOException: Expected semi-colon when reading 
Newick tree. [...]

My questiones are:
1. What am I doing wrong?
2. Is there a way I can use this function as a part of my code, and assign it 
strings and not files?

Thank you!

Original issue reported on code.google.com by [email protected] on 18 Sep 2014 at 7:44

Attachments:

• original0.txt
• Qavg_0.0_0.0_0.txt