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_quarto.yml
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_quarto.yml
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project:
type: website
output-dir: _site
website:
title: "Data Analysis in R"
# cookie-consent:
# type: implied
# style: simple
# palette: light
google-analytics: "G-50FV9HPTRE"
page-footer:
left: "Rand, E. (2023). Data Analysis in R for Becoming a Bioscientist (Version 0.1) <https://github.com/3mmaRand/R4BABS>"
right:
- icon: mastodon
href: "https://mastodon.social/users/3mma"
text: "Emma on mastodon"
- icon: github
href: https://github.com/3mmaRand/R4BABS
text: "Emma on GitHub"
navbar:
background: light
twitter-card: true
site-url: "https://3mmarand.github.io/R4BABS/"
repo-url: "https://github.com/3mmaRand/R4BABS"
issue-url: "https://github.com/3mmaRand/R4BABS/issues/new/choose"
repo-actions: [edit, issue]
page-navigation: true
search: true
left:
- text: "Welcome!"
file: index.qmd
- text: "BABS 1"
file: r4babs1/r4babs1.qmd
- text: "BABS 2"
file: r4babs2/r4babs2.qmd
- text: "BABS 4"
file: r4babs4/r4babs4.qmd
- text: "PGT 52M"
file: pgt52m/pgt52m.qmd
tools:
- icon: mastodon
href: "https://mastodon.social/users/3mma"
text: "Emma on mastodon"
- icon: github
href: https://github.com/3mmaRand/R4BABS
text: "Emma on GitHub"
sidebar:
- title: "BABS 1"
style: "floating"
contents:
- href: r4babs1/r4babs1.qmd
- text: ---
- text: ---
- section: "Week 6: Understanding file systems"
contents:
- href: r4babs1/week-6/overview.qmd
text: About
- href: r4babs1/week-6/study_before_workshop.qmd
text: Prepare!
- href: r4babs1/week-6/workshop.qmd
text: Workshop
- href: r4babs1/week-6/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 7: Introduction to R and project organisation"
contents:
- href: r4babs1/week-7/overview.qmd
text: About
- href: r4babs1/week-7/study_before_workshop.qmd
text: Prepare!
- href: r4babs1/week-7/workshop.qmd
text: Workshop
- href: r4babs1/week-7/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 8: Types of variable, summarising and plotting data"
contents:
- href: r4babs1/week-8/overview.qmd
text: About
- href: r4babs1/week-8/study_before_workshop.qmd
text: Prepare!
- href: r4babs1/week-8/workshop.qmd
text: Workshop
- href: r4babs1/week-8/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 9: Summarising data with several variables"
contents:
- href: r4babs1/week-9/overview.qmd
text: About
- href: r4babs1/week-9/study_before_workshop.qmd
text: Prepare!
- href: r4babs1/week-9/workshop.qmd
text: Workshop
- href: r4babs1/week-9/study_after_workshop.qmd
text: Consolidate!
- title: "BABS 2"
style: "floating"
contents:
- href: r4babs2/r4babs2.qmd
- text: ---
- text: ---
- section: "Week 1: The logic of hypothesis testing and CI"
contents:
- href: r4babs2/week-1/overview.qmd
text: About
- href: r4babs2/week-1/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-1/workshop.qmd
text: Workshop
- href: r4babs2/week-1/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 2: Introduction to statistical models: Single regression"
contents:
- href: r4babs2/week-2/overview.qmd
text: About
- href: r4babs2/week-2/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-2/workshop.qmd
text: Workshop
- href: r4babs2/week-2/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 3: Two-sample tests"
contents:
- href: r4babs2/week-3/overview.qmd
text: About
- href: r4babs2/week-3/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-3/workshop.qmd
text: Workshop
- href: r4babs2/week-3/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 4: One-way ANOVA and Kruskal-Wallis"
contents:
- href: r4babs2/week-4/overview.qmd
text: About
- href: r4babs2/week-4/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-4/workshop.qmd
text: Workshop
- href: r4babs2/week-4/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 5: Two-way ANOVA"
contents:
- href: r4babs2/week-5/overview.qmd
text: About
- href: r4babs2/week-5/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-5/workshop.qmd
text: Workshop
- href: r4babs2/week-5/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 6: Association"
contents:
- href: r4babs2/week-6/overview.qmd
text: About
- href: r4babs2/week-6/study_before_workshop.qmd
text: Prepare!
- href: r4babs2/week-6/workshop.qmd
text: Workshop
- href: r4babs2/week-6/study_after_workshop.qmd
text: Consolidate!
- title: "BABS 4"
style: "floating"
contents:
- href: r4babs4/r4babs4.qmd
- text: ---
- text: ---
- section: "Week 1: DA 1 Core"
contents:
- href: r4babs4/week-1/overview.qmd
text: About
- href: r4babs4/week-1/study_before_workshop.qmd
text: Prepare!
- href: r4babs4/week-1/workshop.qmd
text: Workshop
- href: r4babs4/week-1/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 2: DA 2 Immunobiology"
contents:
- href: r4babs4/week-2/overview.qmd
text: About
- href: r4babs4/week-2/study_before_workshop.qmd
text: Prepare!
- href: r4babs4/week-2/workshop.qmd
text: Workshop
- href: r4babs4/week-2/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 4: DA 3 Immunobiology"
contents:
- href: r4babs4/week-4/overview.qmd
text: About
- href: r4babs4/week-4/study_before_workshop.qmd
text: Prepare!
- href: r4babs4/week-4/workshop.qmd
text: Workshop
- href: r4babs4/week-4/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 6: DA 4 Immunobiology"
contents:
- href: r4babs4/week-6/overview.qmd
text: About
- href: r4babs4/week-6/study_before_workshop.qmd
text: Prepare!
- href: r4babs4/week-6/workshop.qmd
text: Workshop
- href: r4babs4/week-6/study_after_workshop.qmd
text: Consolidate!
- title: "PGT 52M"
style: "floating"
background: light
contents:
- href: pgt52m/pgt52m.qmd
- text: ---
- text: ---
- section: "Week 1: Understanding file systems"
contents:
- href: pgt52m/week-1/overview.qmd
text: About
- href: pgt52m/week-1/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-1/workshop.qmd
text: Workshop
- href: pgt52m/week-1/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 2: Introduction to R and project organisation"
contents:
- href: pgt52m/week-2/overview.qmd
text: About
- href: pgt52m/week-2/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-2/workshop.qmd
text: Workshop
- href: pgt52m/week-2/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 3: Types of variable, summarising and plotting data"
contents:
- href: pgt52m/week-3/overview.qmd
text: About
- href: pgt52m/week-3/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-3/workshop.qmd
text: Workshop
- href: pgt52m/week-3/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 4: Summarising data with several variables"
contents:
- href: pgt52m/week-4/overview.qmd
text: About
- href: pgt52m/week-4/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-4/workshop.qmd
text: Workshop
- href: pgt52m/week-4/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 5: The logic of hypothesis testing and CI"
contents:
- href: pgt52m/week-5/overview.qmd
text: About
- href: pgt52m/week-5/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-5/workshop.qmd
text: Workshop
- href: pgt52m/week-5/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 6: Introduction to statistical models: Single regression"
contents:
- href: pgt52m/week-6/overview.qmd
text: About
- href: pgt52m/week-6/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-6/workshop.qmd
text: Workshop
- href: pgt52m/week-6/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 7: Two-sample tests"
contents:
- href: pgt52m/week-7/overview.qmd
text: About
- href: pgt52m/week-7/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-7/workshop.qmd
text: Workshop
- href: pgt52m/week-7/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 8: One-way ANOVA and Kruskal-Wallis"
contents:
- href: pgt52m/week-8/overview.qmd
text: About
- href: pgt52m/week-8/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-8/workshop.qmd
text: Workshop
- href: pgt52m/week-8/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 9: Introduction to the Assessment"
contents:
- href: pgt52m/week-9/overview.qmd
text: About
- href: pgt52m/week-9/study_before_workshop.qmd
text: Prepare!
- href: pgt52m/week-9/workshop.qmd
text: Workshop
- href: pgt52m/week-9/study_after_workshop.qmd
text: Consolidate!
- text: ---
- section: "Week 10: Reproducible Reporting"
contents:
- href:
text: About
- href:
text: Prepare!
- href:
text: Workshop
- href:
text: Consolidate!
execute:
echo: true
warning: false
output: true
error: true
collapse: true
engine: knitr
format:
html:
link-external-newwindow: true
link-external-filter: '^(?:http:|https:)\/\/3mmarand\.github\.io\/R4BABS'
theme:
light: [cosmo, custom.scss]
code-copy: true
code-link: true
code-overflow: wrap
code-line-numbers: false
grid:
sidebar-width: 250px
body-width: 900px
margin-width: 300px
author-meta: Emma Rand
bibliography: references.bib
comments:
hypothesis: true
editor: source